Shows contingency tables as HTML file in browser or viewer pane, or saves them as file.

sjt.xtab(var.row, var.col, weight.by = NULL, title = NULL,
var.labels = NULL, value.labels = NULL, wrap.labels = 20,
show.obs = TRUE, show.cell.prc = FALSE, show.row.prc = FALSE,
show.col.prc = FALSE, show.exp = FALSE, show.legend = FALSE,
show.na = FALSE, show.summary = TRUE, statistics = c("auto", "cramer",
"phi", "spearman", "kendall", "pearson"), string.total = "Total",
digits = 1, tdcol.n = "black", tdcol.expected = "#339999",
tdcol.cell = "#993333", tdcol.row = "#333399", tdcol.col = "#339933",
emph.total = FALSE, emph.color = "#f8f8f8", prc.sign = "&nbsp;&#37;",
hundret = "100.0", CSS = NULL, encoding = NULL, file = NULL,
use.viewer = TRUE, no.output = FALSE, remove.spaces = TRUE, ...)

## Arguments

var.row Variable that should be displayed in the table rows. Cariable that should be displayed in the table columns. Vector of weights that will be applied to weight all cases. Must be a vector of same length as the input vector. Default is NULL, so no weights are used. Table caption, as character vector. Character vector with variable names, which will be used to label variables in the output. Character vector (or list of character vectors) with value labels of the supplied variables, which will be used to label variable values in the output. numeric, determines how many chars of the value, variable or axis labels are displayed in one line and when a line break is inserted. Logical, if TRUE, observed values are shown Logical, if TRUE, cell percentage values are shown Logical, if TRUE, row percentage values are shown Logical, if TRUE, column percentage values are shown Logical, if TRUE, expected values are also shown logical, if TRUE, and depending on plot type and function, a legend is added to the plot. logical, if TRUE, NA's (missing values) are added to the output. Logical, if TRUE, a summary row with chi-squared statistics, degrees of freedom and Cramer's V or Phi coefficient and p-value for the chi-squared statistics. Name of measure of association that should be computed. May be one of "auto", "cramer", "phi", "spearman", "kendall" or "pearson". See 'Details'. Character label for the total column / row header Numeric, amount of digits after decimal point when rounding estimates and values. Color for highlighting count (observed) values in table cells. Default is black. Color for highlighting expected values in table cells. Default is cyan. Color for highlighting cell percentage values in table cells. Default is red. Color for highlighting row percentage values in table cells. Default is blue. Color for highlighting column percentage values in table cells. Default is green. Logical, if TRUE, the total column and row will be emphasized with a different background color. See emph.color. Logical, if emph.total = TRUE, this color value will be used for painting the background of the total column and row. Default is a light grey. The percentage sign that is printed in the table cells, in HTML-format. Default is " %", hence the percentage sign has a non-breaking-space after the percentage value. Default value that indicates the 100-percent column-sums (since rounding values may lead to non-exact results). Default is "100.0". A list with user-defined style-sheet-definitions, according to the official CSS syntax. For more details, see this package-vignette, or 'Details' in sjt.frq. String, indicating the charset encoding used for variable and value labels. Default is NULL, so encoding will be auto-detected depending on your platform (e.g., "UTF-8" for Unix and "Windows-1252" for Windows OS). Change encoding if specific chars are not properly displayed (e.g. German umlauts). Destination file, if the output should be saved as file. If NULL (default), the output will be saved as temporary file and openend either in the IDE's viewer pane or the default web browser. Logical, if TRUE, the HTML table is shown in the IDE's viewer pane. If FALSE or no viewer available, the HTML table is opened in a web browser. Logical, if TRUE, the html-output is neither opened in a browser nor shown in the viewer pane and not even saved to file. This option is useful when the html output should be used in knitr documents. The html output can be accessed via the return value. Logical, if TRUE, leading spaces are removed from all lines in the final string that contains the html-data. Use this, if you want to remove parantheses for html-tags. The html-source may look less pretty, but it may help when exporting html-tables to office tools. Other arguments, currently passed down to the test statistics functions chisq.test() or fisher.test().

## Value

Invisibly returns

• the web page style sheet (page.style),

• the web page content (page.content),

• the complete html-output (page.complete) and

• the html-table with inline-css for use with knitr (knitr)

for further use.

## Details

The p-value for Cramer's V and the Phi coefficient are based on chisq.test(). If any expected value of a table cell is smaller than 5, or smaller than 10 and the df is 1, then fisher.test() is used to compute the p-value. The test statistic is calculated with cramer() resp. phi().

Both test statistic and p-value for Spearman's rho, Kendall's tau and Pearson's r are calculated with cor.test().

When statistics = "auto", only Cramer's V or Phi are calculated, based on the dimension of the table (i.e. if the table has more than two rows or columns, Cramer's V is calculated, else Phi).

## Examples

# prepare sample data set
data(efc)

# print simple cross table with labels# NOT RUN {
sjt.xtab(efc$e16sex, efc$e42dep)

# print cross table with manually set
# labels and expected values
sjt.xtab(
efc$e16sex, efc$e42dep,
var.labels = c("Elder's gender", "Elder's dependency"),
show.exp = TRUE
)

# print minimal cross table with labels, total col/row highlighted
sjt.xtab(efc$e16sex, efc$e42dep, show.cell.prc = FALSE, emph.total = TRUE)

# User defined style sheet
sjt.xtab(efc$e16sex, efc$e42dep,
CSS = list(css.table = "border: 2px solid;",
css.tdata = "border: 1px solid;",
css.horline = "border-bottom: double blue;"))
# }
# ordinal data, use Kendall's tau
sjt.xtab(efc$e42dep, efc$quol_5, statistics = "kendall")

# calculate Spearman's rho, with continuity correction
sjt.xtab(
efc$e42dep, efc$quol_5,
statistics = "spearman",
exact = FALSE,
continuity = TRUE
)